• 同一論文・投稿 (to be publishedを含む)ごとのリストのため、新規公開エントリーより以前に公開されたエントリーも含まれている。
  • カラムTitleは、To be publishedの投稿については仮置であり、ジャーナルからの公開時には変更されている可能性がある。
  •  カラムRelease Dateの"AUTH"は"編集処理済、登録者の確認・同意待ち"を意味し、"HPUB"は"論文発表待ち"を意味する。
  • 2020年9月2日以前に公開された構造については、PDBj Web siteの新型コロナウイルスの構造情報 全エントリー, または, crisp_bioの過去記事「新型コロナウイルスのPDB公開構造一覧 - その6その5その4その3その2その1」参照
  • 2020-09-02日以後、PDBの更新に合わせて新規公開分を原則毎週水曜日に投稿

    ID

    Title

    Release Date

    論文

    Xiang Y, Nambulli S, Xiao Z, Liu H, Sang Z, Duprex WP, Schneidman-Duhovny D, Zhang C, Shi Y.

    Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2.

    Science 2020-11-05

    7JVB

    Crystal structure of the SARS-CoV-2 spike receptor-binding domain (RBD) with nanobody Nb20

    2020-12-02

    論文

    Yuan S [..] Lomakin IB, Xiong Y.

    Nonstructural Protein 1 of SARS-CoV-2 Is a Potent Pathogenicity Factor Redirecting Host Protein Synthesis Machinery toward Viral RNA.

    Mol Cell 2020-10-29

    7JQB

    SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

    2020-12-02

    7JQC

    SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

    2020-12-02


    Gregor J, Rack M, Zorzini V, Zhu Z, Schuller M, Ahel D, Ahel I.

    Viral macrodomains: a structural and evolutionary assessment of the pharmacological potential.

    Open Biology 2020-11-18

    6Z5T

    SARS-CoV-2 Macrodomain in complex with ADP-ribose

    2020-12-02

    6Z6I

    SARS-CoV-2 Macrodomain in complex with ADP-HPD

    2020-12-02

    6Z72

    SARS-CoV-2 Macrodomain in complex with ADP-HPM

    2020-12-02


    Costanzi, E., Demitri, N., Giabbai, B., Heroux, A., Storici, P.

    Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.65A resolution (spacegroup C2).

    To be published

    7ALI

    Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.65A resolution (spacegroup P2(1)).

    2020-12-02


    Center for Structural Genomics of Infectious Diseases (CSGID)

    The crystal structure of Papain-Like Protease of SARS CoV-2

    To be published

    7KRX 

    The crystal structure of Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with PLP_Snyder441

    2020-12-02

    先行公開あり

    "The crystal structure of Papain-Like Protease of SARS CoV-2, …"関連構造2020-10-21公開以後で14件あり



    Godoy, A.S., Nakamura, A.M., Pereira, H.M., Noske, G.D., Gawriljuk, V.O., Fernandes, R.S., Oliveira, K.I.Z., Oliva, G.

    Crystal structure from SARS-CoV-2 NendoU NSP15

    To be published

    7KEH

    Crystal structure from SARS-CoV-2 NendoU NSP15

    2020-12-02

    7KF4

    Crystal structure from SARS-CoV-2 NendoU NSP15

    2020-12-02

    7KEG

    Crystal structure from SARS-CoV-2 NendoU NSP15

    2020-12-02


    Pan, J., Abraham, J., Clark, L., Clark, S.

    Molecular basis for a germline-biased neutralizing antibody response to SARS-CoV-2.

    bioRxiv 2020-11-13

    7KFV

    Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B12 Fab)

    2020-12-02

    7KFY

    Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-F10 Fab)

    2020-12-02

    7KFX

    Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-C2 Fab)

    2020-12-02

    7KFW

    Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B3 Fab)

    2020-12-02


    Fearon, D., Owen, C.D., Douangamath, A., Lukacik, P., Powell, A.J., Strain-Damerell, C.M., Zaidman, D., Krojer, T., Gehrtz, P., Wild, C., Aimon, A., Brandao-Neto, J., Carbery, A., Dunnett, L., Gorie-Stone, T.J., Skyner, R., London, N., Walsh, M.A., von Delft, F.

    PanDDA analysis group deposition of computational designs of SARS-CoV-2 main protease covalent inhibitors

    To be published

    5RL0

    ... in complex with LON-WEI-adc59df6-2 (Mpro-x3110)

    2020-12-02

    5RL1

    ...  in complex with LON-WEI-adc59df6-27 (Mpro-x3113)

    2020-12-02

    5RL2

    ...  in complex with LON-WEI-adc59df6-26 (Mpro-x3115)

    2020-12-02

    5RL3

    ...  in complex with LON-WEI-adc59df6-39 (Mpro-x3117)

    2020-12-02

    5RL4

    ...  in complex with LON-WEI-adc59df6-3 (Mpro-x3124)

    2020-12-02

    5RL5

    ...  in complex with LON-WEI-adc59df6-30 (Mpro-x3359)

    2020-12-02


    Cong, Y., Wang, Y.F.

    Development and strudel basis of a two-MAb cocktail for treating SARS-CoV-2 infections

    To be published in Nat Commun

    7DK4

    S-2H2-F3a structure, two RBDs are up and one RBD is down, each RBD binds with a 2H2 Fab.

    2020-12-02

    7DK6

    S-2H2-F2 structure, two RBDs are up and one RBD is down, each up RBD binds with a 2H2 Fab.

    2020-12-02

    7DCC

    S-3C1-F3b structure, all the three RBDs are in the up conformation and each of them associates with a 3C1 Fab.

    2020-12-02

    7DD2

    S-3C1-F2 structure, two RBDs are up and one RBD is down, the two up RBD bind with a 3C1 fab.

    2020-12-02

    7DCX

    S-3C1-F3a structure, two RBDs are up and one RBD is down, each RBD binds with a 3C1 fab.

    2020-12-02

    7DD8

    S-3C1-F1 structure, one RBD is up and two RBDs are down, the up RBD binds with a 3C1 fab

    2020-12-02

    7DK7

    S-2H2-F3b structure, three RBDs are up and each RBD binds with a 2H2 Fab.

    2020-12-02

    7DK5

    S-2H2-F1 structure, one RBD is up and two RBDs are down, only up RBD binds with a 2H2 Fab

    2020-12-02

    投稿

    Günther S, Reinke PYA [..] Meents A. 

    Inhibition of SARS-CoV-2 main protease by allosteric drug-binding

    bioRxiv 2020-11-23


    メインプロテアーゼの構造 (7AR5, 7AR6)

    リパーパシング・ドラッグとの複合体構造 (7AWR, 7AXM, 7AOL, 7AY7, 7AMJ, 7ABU, 7ADW, 7AK4, 7AWW, 7AXO, 7APH, 7A1U, 7AGA, 7AHA, 7ANS, 7AF0, 7AQI, 7AP6, 7AVD, 7AWS, 7AX6, 7ARF, 7AWU, 7AQJ)

    2020-12-02